J3_6OPE_062

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6OPE|1|RA|C|34, 6OPE|1|RA|U|448, 6OPE|1|RA|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_062 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0995

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6OPE|1|RA|C|32
6OPE|1|RA|U|33
6OPE|1|RA|C|34
6OPE|1|RA|G|35
*
6OPE|1|RA|C|445
6OPE|1|RA|G|446
6OPE|1|RA|A|447
6OPE|1|RA|U|448
6OPE|1|RA|A|449
6OPE|1|RA|G|450
6OPE|1|RA|C|451
6OPE|1|RA|G|452
6OPE|1|RA|C|453
6OPE|1|RA|A|454
6OPE|1|RA|C|455
6OPE|1|RA|C|456
6OPE|1|RA|A|457
6OPE|1|RA|G|458
6OPE|1|RA|U|459
6OPE|1|RA|A|460
6OPE|1|RA|C|461
*
6OPE|1|RA|G|468
6OPE|1|RA|G|469
6OPE|1|RA|A|470
6OPE|1|RA|A|471
6OPE|1|RA|A|472
6OPE|1|RA|G|473

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RF

50S ribosomal protein L4

Chain RU

50S ribosomal protein L20

Chain RX

50S ribosomal protein L23