3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCCUAAG*UAGGAAUCU*AGC
Length
19 nucleotides
Bulged bases
6OPE|1|XA|C|48, 6OPE|1|XA|A|50, 6OPE|1|XA|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OPE_067 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.0852
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OPE|1|XA|G|46
6OPE|1|XA|C|47
6OPE|1|XA|C|48
6OPE|1|XA|U|49
6OPE|1|XA|A|50
6OPE|1|XA|A|51
6OPE|1|XA|G|52
*
6OPE|1|XA|U|359
6OPE|1|XA|A|360
6OPE|1|XA|G|361
6OPE|1|XA|G|362
6OPE|1|XA|A|363
6OPE|1|XA|A|364
6OPE|1|XA|U|365
6OPE|1|XA|C|366
6OPE|1|XA|U|367
*
6OPE|1|XA|A|393
6OPE|1|XA|G|394
6OPE|1|XA|C|395

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XP
30S ribosomal protein S16

Coloring options:


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