3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
6ORD|1|QA|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ORD_059 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1456
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

6ORD|1|QA|C|990
6ORD|1|QA|U|991
6ORD|1|QA|U|992
6ORD|1|QA|G|993
6ORD|1|QA|A|994
6ORD|1|QA|C|995
6ORD|1|QA|A|996
6ORD|1|QA|U|997
*
6ORD|1|QA|A|1044
6ORD|1|QA|C|1045
6ORD|1|QA|A|1046
6ORD|1|QA|G|1047
*
6ORD|1|QA|C|1210
6ORD|1|QA|U|1211
6ORD|1|QA|U|1212
6ORD|1|QA|A|1213
6ORD|1|QA|C|1214
6ORD|1|QA|G|1215

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QN
30S ribosomal protein S14 type Z
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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