J3_6ORD_059

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6ORD|1|QA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORD_059 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1456

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6ORD|1|QA|C|990
6ORD|1|QA|U|991
6ORD|1|QA|U|992
6ORD|1|QA|G|993
6ORD|1|QA|A|994
6ORD|1|QA|C|995
6ORD|1|QA|A|996
6ORD|1|QA|U|997
*
6ORD|1|QA|A|1044
6ORD|1|QA|C|1045
6ORD|1|QA|A|1046
6ORD|1|QA|G|1047
*
6ORD|1|QA|C|1210
6ORD|1|QA|U|1211
6ORD|1|QA|U|1212
6ORD|1|QA|A|1213
6ORD|1|QA|C|1214
6ORD|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain YA

Large subunit ribosomal RNA; LSU rRNA