J3_6ORE_019

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORE_019 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0731

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ORE|1|2|U|943
6ORE|1|2|G|944
6ORE|1|2|G|945
6ORE|1|2|A|946
*
6ORE|1|2|U|1235
6ORE|1|2|A|1236
6ORE|1|2|C|1237
*
6ORE|1|2|G|1337
6ORE|1|2|G|1338
6ORE|1|2|A|1339
6ORE|1|2|A|1340

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13