J3_6ORE_025

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6ORE|1|2|U|1240, 6ORE|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ORE_025 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1466

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6ORE|1|2|C|1237
6ORE|1|2|A|1238
6ORE|1|2|A|1239
6ORE|1|2|U|1240
6ORE|1|2|G|1241
*
6ORE|1|2|C|1296
6ORE|1|2|G|1297
6ORE|1|2|U|1298
6ORE|1|2|A|1299
6ORE|1|2|G|1300
6ORE|1|2|U|1301
6ORE|1|2|C|1302
6ORE|1|2|C|1303
*
6ORE|1|2|G|1334
6ORE|1|2|U|1335
6ORE|1|2|C|1336
6ORE|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13