3D structure

PDB id
6ORE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release complex 70S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6ORE|1|1|A|504, 6ORE|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ORE_027 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1086
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17917.1
Basepair signature
cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
Number of instances in this motif group
9

Unit IDs

6ORE|1|1|G|30
6ORE|1|1|C|31
*
6ORE|1|1|G|474
6ORE|1|1|C|475
6ORE|1|1|G|476
6ORE|1|1|A|477
6ORE|1|1|A|478
6ORE|1|1|A|479
6ORE|1|1|A|480
6ORE|1|1|G|481
6ORE|1|1|A|482
6ORE|1|1|A|483
6ORE|1|1|C|484
*
6ORE|1|1|G|496
6ORE|1|1|A|497
6ORE|1|1|G|498
6ORE|1|1|U|499
6ORE|1|1|G|500
6ORE|1|1|A|501
6ORE|1|1|A|502
6ORE|1|1|A|503
6ORE|1|1|A|504
6ORE|1|1|A|505
6ORE|1|1|G|506
6ORE|1|1|A|507
6ORE|1|1|A|508
6ORE|1|1|C|509
6ORE|1|1|C|510

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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