J3_6OSI_029

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OSI|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSI_029 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1021

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OSI|1|XA|C|826
6OSI|1|XA|U|827
6OSI|1|XA|A|828
6OSI|1|XA|G|829
*
6OSI|1|XA|C|857
6OSI|1|XA|G|858
6OSI|1|XA|A|859
6OSI|1|XA|A|860
6OSI|1|XA|G|861
*
6OSI|1|XA|C|868
6OSI|1|XA|G|869
6OSI|1|XA|U|870
6OSI|1|XA|U|871
6OSI|1|XA|A|872
6OSI|1|XA|A|873
6OSI|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8

Chain XX

mRNA