J3_6OSK_031

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6OSK|1|2|C|48, 6OSK|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OSK_031 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0962

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OSK|1|2|G|46
6OSK|1|2|C|47
6OSK|1|2|C|48
6OSK|1|2|U|49
6OSK|1|2|A|50
6OSK|1|2|A|51
6OSK|1|2|C|52
*
6OSK|1|2|G|359
6OSK|1|2|G|360
6OSK|1|2|G|361
6OSK|1|2|G|362
6OSK|1|2|A|363
6OSK|1|2|A|364
6OSK|1|2|U|365
6OSK|1|2|A|366
6OSK|1|2|U|367
*
6OSK|1|2|A|393
6OSK|1|2|G|394
6OSK|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16