J3_6OST_006

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6OST|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OST_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1422

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

6OST|1|1|C|1306
6OST|1|1|A|1307
6OST|1|1|A|1308
6OST|1|1|G|1309
*
6OST|1|1|C|1605
6OST|1|1|C|1606
6OST|1|1|C|1607
6OST|1|1|A|1608
6OST|1|1|A|1609
6OST|1|1|A|1610
6OST|1|1|C|1611
*
6OST|1|1|G|1620
6OST|1|1|U|1621
6OST|1|1|G|1622

Current chains

Chain 1

23S Ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34