J3_6OST_024

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6OST|1|2|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OST_024 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1673

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

6OST|1|2|C|1237
6OST|1|2|A|1238
6OST|1|2|A|1239
6OST|1|2|U|1240
6OST|1|2|G|1241
*
6OST|1|2|C|1296
6OST|1|2|G|1297
6OST|1|2|U|1298
6OST|1|2|A|1299
6OST|1|2|G|1300
6OST|1|2|U|1301
6OST|1|2|C|1302
6OST|1|2|C|1303
*
6OST|1|2|G|1334
6OST|1|2|U|1335
6OST|1|2|C|1336
6OST|1|2|G|1337

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13