J3_6OT3_015

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OT3|1|2|U|871, 6OT3|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OT3_015 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1091

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OT3|1|2|C|826
6OT3|1|2|U|827
6OT3|1|2|U|828
6OT3|1|2|G|829
*
6OT3|1|2|C|857
6OT3|1|2|G|858
6OT3|1|2|G|859
6OT3|1|2|A|860
6OT3|1|2|G|861
*
6OT3|1|2|C|868
6OT3|1|2|G|869
6OT3|1|2|U|870
6OT3|1|2|U|871
6OT3|1|2|A|872
6OT3|1|2|A|873
6OT3|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21