J3_6OT3_034

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

6OT3|1|2|C|48, 6OT3|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OT3_034 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1091

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OT3|1|2|G|46
6OT3|1|2|C|47
6OT3|1|2|C|48
6OT3|1|2|U|49
6OT3|1|2|A|50
6OT3|1|2|A|51
6OT3|1|2|C|52
*
6OT3|1|2|G|359
6OT3|1|2|G|360
6OT3|1|2|G|361
6OT3|1|2|G|362
6OT3|1|2|A|363
6OT3|1|2|A|364
6OT3|1|2|U|365
6OT3|1|2|A|366
6OT3|1|2|U|367
*
6OT3|1|2|A|393
6OT3|1|2|G|394
6OT3|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16