J3_6OTR_032

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OTR|1|XA|U|871, 6OTR|1|XA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OTR_032 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.109

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

6OTR|1|XA|C|826
6OTR|1|XA|U|827
6OTR|1|XA|A|828
6OTR|1|XA|G|829
*
6OTR|1|XA|C|857
6OTR|1|XA|G|858
6OTR|1|XA|A|859
6OTR|1|XA|A|860
6OTR|1|XA|G|861
*
6OTR|1|XA|C|868
6OTR|1|XA|G|869
6OTR|1|XA|U|870
6OTR|1|XA|U|871
6OTR|1|XA|A|872
6OTR|1|XA|A|873
6OTR|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8