J3_6OTR_070

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6OTR|1|XA|U|1212, 6OTR|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OTR_070 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1639

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6OTR|1|XA|C|990
6OTR|1|XA|U|991
6OTR|1|XA|U|992
6OTR|1|XA|G|993
6OTR|1|XA|A|994
6OTR|1|XA|C|995
6OTR|1|XA|A|996
6OTR|1|XA|U|997
*
6OTR|1|XA|A|1044
6OTR|1|XA|C|1045
6OTR|1|XA|A|1046
6OTR|1|XA|G|1047
*
6OTR|1|XA|C|1210
6OTR|1|XA|U|1211
6OTR|1|XA|U|1212
6OTR|1|XA|A|1213
6OTR|1|XA|C|1214
6OTR|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z

Chain XY

Addiction module toxin, Txe/YoeB family

Chain XZ

Addiction module toxin, Txe/YoeB family