J3_6OUO_015

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OUO|1|2|U|871, 6OUO|1|2|A|873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OUO_015 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1091

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OUO|1|2|C|826
6OUO|1|2|U|827
6OUO|1|2|U|828
6OUO|1|2|G|829
*
6OUO|1|2|C|857
6OUO|1|2|G|858
6OUO|1|2|G|859
6OUO|1|2|A|860
6OUO|1|2|G|861
*
6OUO|1|2|C|868
6OUO|1|2|G|869
6OUO|1|2|U|870
6OUO|1|2|U|871
6OUO|1|2|A|872
6OUO|1|2|A|873
6OUO|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21