J3_6OUO_031

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OUO_031 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0888

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OUO|1|1|G|1424
6OUO|1|1|G|1425
6OUO|1|1|G|1426
6OUO|1|1|A|1427
6OUO|1|1|C|1428
6OUO|1|1|G|1429
*
6OUO|1|1|C|1564
6OUO|1|1|C|1565
*
6OUO|1|1|G|1568
6OUO|1|1|A|1569
6OUO|1|1|A|1570
6OUO|1|1|A|1571
6OUO|1|1|A|1572
6OUO|1|1|G|1573
6OUO|1|1|C|1574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2