J3_6OXA_032

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OXA|1|XA|U|871, 6OXA|1|XA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OXA_032 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1117

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

6OXA|1|XA|C|826
6OXA|1|XA|U|827
6OXA|1|XA|A|828
6OXA|1|XA|G|829
*
6OXA|1|XA|C|857
6OXA|1|XA|G|858
6OXA|1|XA|A|859
6OXA|1|XA|A|860
6OXA|1|XA|G|861
*
6OXA|1|XA|C|868
6OXA|1|XA|G|869
6OXA|1|XA|U|870
6OXA|1|XA|U|871
6OXA|1|XA|A|872
6OXA|1|XA|A|873
6OXA|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8