J3_6OXA_047

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OXA_047 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.3868

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6OXA|1|YA|G|1055
6OXA|1|YA|G|1056
6OXA|1|YA|A|1057
*
6OXA|1|YA|U|1081
6OXA|1|YA|U|1082
6OXA|1|YA|U|1083
6OXA|1|YA|A|1084
6OXA|1|YA|A|1085
6OXA|1|YA|A|1086
6OXA|1|YA|G|1087
*
6OXA|1|YA|C|1102
6OXA|1|YA|A|1103
6OXA|1|YA|C|1104

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36