J3_6OXA_056
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 6OXA|1|YB|U|14, 6OXA|1|YB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXA_056 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.335
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6OXA|1|YB|C|11
6OXA|1|YB|C|12
6OXA|1|YB|A|13
6OXA|1|YB|U|14
6OXA|1|YB|A|15
6OXA|1|YB|G|16
*
6OXA|1|YB|C|68
6OXA|1|YB|G|69
*
6OXA|1|YB|U|107
6OXA|1|YB|C|108
6OXA|1|YB|G|109
Current chains
- Chain YB
- 5S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YS
- 50S ribosomal protein L18
- Chain YZ
- 50S ribosomal protein L25
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