J3_6OXA_059
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 6OXA|1|QA|U|1212, 6OXA|1|QA|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXA_059 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1701
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OXA|1|QA|C|990
6OXA|1|QA|U|991
6OXA|1|QA|U|992
6OXA|1|QA|G|993
6OXA|1|QA|A|994
6OXA|1|QA|C|995
6OXA|1|QA|A|996
6OXA|1|QA|U|997
*
6OXA|1|QA|A|1044
6OXA|1|QA|C|1045
6OXA|1|QA|A|1046
6OXA|1|QA|G|1047
*
6OXA|1|QA|C|1210
6OXA|1|QA|U|1211
6OXA|1|QA|U|1212
6OXA|1|QA|A|1213
6OXA|1|QA|C|1214
6OXA|1|QA|G|1215
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QN
- 30S ribosomal protein S14 type Z
- Chain QY
- Addiction module toxin, Txe/YoeB family
- Chain QZ
- Addiction module toxin, Txe/YoeB family
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: