J3_6OXA_063
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6OXA|1|RA|C|34, 6OXA|1|RA|U|448, 6OXA|1|RA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXA_063 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0932
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6OXA|1|RA|C|32
6OXA|1|RA|U|33
6OXA|1|RA|C|34
6OXA|1|RA|G|35
*
6OXA|1|RA|C|445
6OXA|1|RA|G|446
6OXA|1|RA|A|447
6OXA|1|RA|U|448
6OXA|1|RA|A|449
6OXA|1|RA|G|450
6OXA|1|RA|C|451
6OXA|1|RA|G|452
6OXA|1|RA|C|453
6OXA|1|RA|A|454
6OXA|1|RA|C|455
6OXA|1|RA|C|456
6OXA|1|RA|A|457
6OXA|1|RA|G|458
6OXA|1|RA|U|459
6OXA|1|RA|A|460
6OXA|1|RA|C|461
*
6OXA|1|RA|G|468
6OXA|1|RA|G|469
6OXA|1|RA|A|470
6OXA|1|RA|A|471
6OXA|1|RA|A|472
6OXA|1|RA|G|473
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RF
- 50S ribosomal protein L4
- Chain RU
- 50S ribosomal protein L20
- Chain RX
- 50S ribosomal protein L23
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