J3_6OXI_031
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6OXI|1|XA|U|871, 6OXI|1|XA|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXI_031 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.1082
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6OXI|1|XA|C|826
6OXI|1|XA|U|827
6OXI|1|XA|A|828
6OXI|1|XA|G|829
*
6OXI|1|XA|C|857
6OXI|1|XA|G|858
6OXI|1|XA|A|859
6OXI|1|XA|A|860
6OXI|1|XA|G|861
*
6OXI|1|XA|C|868
6OXI|1|XA|G|869
6OXI|1|XA|U|870
6OXI|1|XA|U|871
6OXI|1|XA|A|872
6OXI|1|XA|A|873
6OXI|1|XA|G|874
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XB
- 30S ribosomal protein S2
- Chain XH
- 30S ribosomal protein S8
Coloring options: