J3_6P4G_004

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4G_004 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2002

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6P4G|1|2|A|816
6P4G|1|2|G|817
6P4G|1|2|A|818
6P4G|1|2|G|819
*
6P4G|1|2|C|829
6P4G|1|2|A|830
6P4G|1|2|G|831
*
6P4G|1|2|C|843
6P4G|1|2|U|844
6P4G|1|2|G|845
6P4G|1|2|G|846
6P4G|1|2|A|847
6P4G|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24