J3_6P4H_007

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4H_007 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.106

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6P4H|1|2|C|1218
6P4H|1|2|C|1219
6P4H|1|2|A|1220
6P4H|1|2|G|1221
*
6P4H|1|2|C|1645
6P4H|1|2|C|1646
6P4H|1|2|A|1647
6P4H|1|2|G|1648
6P4H|1|2|U|1649
6P4H|1|2|A|1650
6P4H|1|2|A|1651
*
6P4H|1|2|U|1673
6P4H|1|2|G|1674
6P4H|1|2|A|1675
6P4H|1|2|U|1676
6P4H|1|2|U|1677
6P4H|1|2|A|1678
6P4H|1|2|A|1679
6P4H|1|2|G|1680

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28