J3_6P4H_010

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6P4H|1|2|G|1274, 6P4H|1|2|G|1507, 6P4H|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4H_010 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.0972

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6P4H|1|2|C|1272
6P4H|1|2|C|1273
6P4H|1|2|G|1274
6P4H|1|2|G|1275
6P4H|1|2|A|1276
6P4H|1|2|C|1277
*
6P4H|1|2|G|1320
6P4H|1|2|G|1321
6P4H|1|2|G|1322
6P4H|1|2|U|1323
6P4H|1|2|G|1324
*
6P4H|1|2|U|1504
6P4H|1|2|U|1505
6P4H|1|2|A|1506
6P4H|1|2|G|1507
6P4H|1|2|A|1508
6P4H|1|2|U|1509
6P4H|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

eS29

Chain g

eS31