J3_6P5I_004

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5I_004 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1821

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6P5I|1|2|A|816
6P5I|1|2|G|817
6P5I|1|2|A|818
6P5I|1|2|G|819
*
6P5I|1|2|C|829
6P5I|1|2|A|830
6P5I|1|2|G|831
*
6P5I|1|2|C|843
6P5I|1|2|U|844
6P5I|1|2|G|845
6P5I|1|2|G|846
6P5I|1|2|A|847
6P5I|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24