J3_6P5I_019
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6P5I|1|5|U|2788, 6P5I|1|5|A|2789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5I_019 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2719
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6P5I|1|5|G|2402
6P5I|1|5|A|2403
6P5I|1|5|A|2404
6P5I|1|5|G|2405
*
6P5I|1|5|C|2785
6P5I|1|5|C|2786
6P5I|1|5|A|2787
6P5I|1|5|U|2788
6P5I|1|5|A|2789
6P5I|1|5|U|2790
6P5I|1|5|C|2791
*
6P5I|1|5|G|2800
6P5I|1|5|U|2801
6P5I|1|5|C|2802
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Ag
- eL34
- Chain Aj
- eL37
- Chain Al
- eL39
Coloring options: