J3_6P5I_027
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 6P5I|1|5|A|4464, 6P5I|1|5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5I_027 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0797
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6P5I|1|5|U|4463
6P5I|1|5|A|4464
6P5I|1|5|U|4465
6P5I|1|5|C|4466
*
6P5I|1|5|G|4491
6P5I|1|5|U|4492
6P5I|1|5|U|4493
*
6P5I|1|5|A|4507
6P5I|1|5|C|4508
6P5I|1|5|U|4509
6P5I|1|5|A|4510
6P5I|1|5|A|4511
6P5I|1|5|U|4512
6P5I|1|5|A|4513
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AO
- uL13
- Chain AV
- uL14
Coloring options: