J3_6P5J_014

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6P5J|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|C|112
6P5J|1|5|A|113
6P5J|1|5|G|114
6P5J|1|5|C|115
6P5J|1|5|G|116
*
6P5J|1|5|C|155
6P5J|1|5|G|156
6P5J|1|5|U|157
6P5J|1|5|A|158
6P5J|1|5|C|159
6P5J|1|5|G|160
*
6P5J|1|5|C|275
6P5J|1|5|C|276
6P5J|1|5|G|277
6P5J|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AG

eL8

Chain AL

eL13

Chain AN

eL15

Chain Ah

eL35

Chain Ai

eL36