J3_6P5J_033
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6P5J|1|5|U|354, 6P5J|1|5|A|362, 6P5J|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5J_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0687
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6P5J|1|5|C|351
6P5J|1|5|G|352
6P5J|1|5|A|353
6P5J|1|5|U|354
6P5J|1|5|A|355
6P5J|1|5|G|356
6P5J|1|5|U|357
6P5J|1|5|C|358
6P5J|1|5|A|359
6P5J|1|5|A|360
6P5J|1|5|C|361
6P5J|1|5|A|362
6P5J|1|5|A|363
6P5J|1|5|G|364
6P5J|1|5|U|365
6P5J|1|5|A|366
6P5J|1|5|C|367
*
6P5J|1|5|G|374
6P5J|1|5|G|375
6P5J|1|5|A|376
6P5J|1|5|A|377
6P5J|1|5|A|378
6P5J|1|5|G|379
*
6P5J|1|8|C|21
6P5J|1|8|U|22
6P5J|1|8|C|23
6P5J|1|8|G|24
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AY
- uL24
- Chain Aj
- eL37
- Chain Al
- eL39
Coloring options: