J3_6P5J_034
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6P5J|1|5|G|409, 6P5J|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5J_034 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.323
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6P5J|1|5|U|380
6P5J|1|5|U|381
6P5J|1|5|G|382
6P5J|1|5|A|383
6P5J|1|5|A|384
6P5J|1|5|A|385
6P5J|1|5|A|386
6P5J|1|5|G|387
6P5J|1|5|A|388
6P5J|1|5|A|389
6P5J|1|5|C|390
*
6P5J|1|5|G|401
6P5J|1|5|A|402
6P5J|1|5|G|403
6P5J|1|5|U|404
6P5J|1|5|U|405
6P5J|1|5|C|406
6P5J|1|5|A|407
6P5J|1|5|A|408
6P5J|1|5|G|409
6P5J|1|5|A|410
6P5J|1|5|G|411
6P5J|1|5|G|412
6P5J|1|5|G|413
6P5J|1|5|C|414
6P5J|1|5|G|415
*
6P5J|1|8|C|19
6P5J|1|8|A|20
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AP
- uL22
- Chain AY
- uL24
- Chain Al
- eL39
Coloring options: