3D structure

PDB id
6P5J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGAAG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6P5J_038 not in the Motif Atlas
Homologous match to J3_8P9A_058
Geometric discrepancy: 0.187
The information below is about J3_8P9A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

6P5J|1|5|A|2598
6P5J|1|5|G|2599
6P5J|1|5|A|2600
6P5J|1|5|A|2601
6P5J|1|5|G|2602
*
6P5J|1|5|C|2737
6P5J|1|5|C|2738
*
6P5J|1|5|G|2742
6P5J|1|5|A|2743
6P5J|1|5|A|2744
6P5J|1|5|A|2745
6P5J|1|5|A|2746
6P5J|1|5|U|2747

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AA
uL2
Chain Ag
eL34
Chain Ap
eL43

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1733 s