J3_6P5J_042
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5J_042 not in the Motif Atlas
- Homologous match to J3_8CRE_015
- Geometric discrepancy: 0.1823
- The information below is about J3_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6P5J|1|5|U|2440
6P5J|1|5|C|2441
6P5J|1|5|G|2442
6P5J|1|5|G|2443
6P5J|1|5|U|2444
6P5J|1|5|C|2445
*
6P5J|1|5|G|2515
6P5J|1|5|G|2516
6P5J|1|5|A|2517
6P5J|1|5|G|2518
6P5J|1|5|U|2519
*
6P5J|1|5|A|2536
6P5J|1|5|A|2537
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- eL23
- Chain Ag
- eL34
- Chain Ak
- eL38
- Chain Al
- eL39
Coloring options: