J3_6P5K_017
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 6P5K|1|5|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5K_017 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.156
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6P5K|1|5|G|1545
6P5K|1|5|C|1546
6P5K|1|5|A|1547
6P5K|1|5|G|1548
*
6P5K|1|5|C|1580
6P5K|1|5|G|1581
6P5K|1|5|U|1582
6P5K|1|5|A|1583
6P5K|1|5|G|1584
*
6P5K|1|5|U|1609
6P5K|1|5|C|1610
6P5K|1|5|C|1611
6P5K|1|5|G|1612
6P5K|1|5|A|1613
6P5K|1|5|C|1614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- uL2
- Chain AR
- eL19
- Chain Ag
- eL34
- Chain Ap
- eL43
Coloring options: