3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UCGGUC*GGAGU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6P5K_021 not in the Motif Atlas
Homologous match to J3_5TBW_010
Geometric discrepancy: 0.1487
The information below is about J3_5TBW_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_70383.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

6P5K|1|5|U|2440
6P5K|1|5|C|2441
6P5K|1|5|G|2442
6P5K|1|5|G|2443
6P5K|1|5|U|2444
6P5K|1|5|C|2445
*
6P5K|1|5|G|2515
6P5K|1|5|G|2516
6P5K|1|5|A|2517
6P5K|1|5|G|2518
6P5K|1|5|U|2519
*
6P5K|1|5|A|2536
6P5K|1|5|A|2537

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain AX
eL23
Chain Ag
eL34
Chain Ak
eL38
Chain Al
eL39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2943 s