J3_6P5N_020
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 6P5N|1|5|A|2396
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5N_020 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.0901
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
6P5N|1|5|C|2393
6P5N|1|5|G|2394
6P5N|1|5|A|2395
6P5N|1|5|A|2396
6P5N|1|5|G|2397
6P5N|1|5|U|2398
6P5N|1|5|G|2399
*
6P5N|1|5|C|2805
6P5N|1|5|A|2806
6P5N|1|5|A|2807
*
6P5N|1|5|U|2819
6P5N|1|5|C|2820
6P5N|1|5|U|2821
6P5N|1|5|G|2822
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AR
- eL19
- Chain Ag
- eL34
Coloring options: