J3_6PC5_015

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PC5|1|I|A|504, 6PC5|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC5_015 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1108

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6PC5|1|I|G|30
6PC5|1|I|C|31
*
6PC5|1|I|G|474
6PC5|1|I|C|475
6PC5|1|I|G|476
6PC5|1|I|A|477
6PC5|1|I|A|478
6PC5|1|I|A|479
6PC5|1|I|A|480
6PC5|1|I|G|481
6PC5|1|I|A|482
6PC5|1|I|A|483
6PC5|1|I|C|484
*
6PC5|1|I|G|496
6PC5|1|I|A|497
6PC5|1|I|G|498
6PC5|1|I|U|499
6PC5|1|I|G|500
6PC5|1|I|A|501
6PC5|1|I|A|502
6PC5|1|I|A|503
6PC5|1|I|A|504
6PC5|1|I|A|505
6PC5|1|I|G|506
6PC5|1|I|A|507
6PC5|1|I|A|508
6PC5|1|I|C|509
6PC5|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains