J3_6PC6_005

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC6_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0952

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PC6|1|I|C|1298
6PC6|1|I|G|1299
6PC6|1|I|G|1300
6PC6|1|I|A|1301
6PC6|1|I|A|1302
6PC6|1|I|G|1303
*
6PC6|1|I|C|1625
6PC6|1|I|A|1626
6PC6|1|I|G|1627
*
6PC6|1|I|C|1639
6PC6|1|I|A|1640
6PC6|1|I|A|1641
6PC6|1|I|G|1642

Current chains

Chain I

23S ribosomal RNA

Nearby chains