J3_6PC6_014

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PC6|1|I|A|504, 6PC6|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC6_014 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1217

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6PC6|1|I|G|30
6PC6|1|I|C|31
*
6PC6|1|I|G|474
6PC6|1|I|C|475
6PC6|1|I|G|476
6PC6|1|I|A|477
6PC6|1|I|A|478
6PC6|1|I|A|479
6PC6|1|I|A|480
6PC6|1|I|G|481
6PC6|1|I|A|482
6PC6|1|I|A|483
6PC6|1|I|C|484
*
6PC6|1|I|G|496
6PC6|1|I|A|497
6PC6|1|I|G|498
6PC6|1|I|U|499
6PC6|1|I|G|500
6PC6|1|I|A|501
6PC6|1|I|A|502
6PC6|1|I|A|503
6PC6|1|I|A|504
6PC6|1|I|A|505
6PC6|1|I|G|506
6PC6|1|I|A|507
6PC6|1|I|A|508
6PC6|1|I|C|509
6PC6|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains