J3_6PC7_014

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PC7|1|I|A|504, 6PC7|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC7_014 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1149

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6PC7|1|I|G|30
6PC7|1|I|C|31
*
6PC7|1|I|G|474
6PC7|1|I|C|475
6PC7|1|I|G|476
6PC7|1|I|A|477
6PC7|1|I|A|478
6PC7|1|I|A|479
6PC7|1|I|A|480
6PC7|1|I|G|481
6PC7|1|I|A|482
6PC7|1|I|A|483
6PC7|1|I|C|484
*
6PC7|1|I|G|496
6PC7|1|I|A|497
6PC7|1|I|G|498
6PC7|1|I|U|499
6PC7|1|I|G|500
6PC7|1|I|A|501
6PC7|1|I|A|502
6PC7|1|I|A|503
6PC7|1|I|A|504
6PC7|1|I|A|505
6PC7|1|I|G|506
6PC7|1|I|A|507
6PC7|1|I|A|508
6PC7|1|I|C|509
6PC7|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains