J3_6PC8_006

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6PC8|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1431

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6PC8|1|I|C|1306
6PC8|1|I|A|1307
6PC8|1|I|A|1308
6PC8|1|I|G|1309
*
6PC8|1|I|C|1605
6PC8|1|I|C|1606
6PC8|1|I|C|1607
6PC8|1|I|A|1608
6PC8|1|I|A|1609
6PC8|1|I|A|1610
6PC8|1|I|C|1611
*
6PC8|1|I|G|1620
6PC8|1|I|U|1621
6PC8|1|I|G|1622

Current chains

Chain I

23S ribosomal RNA

Nearby chains