J3_6PCH_006

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCH_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1224

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PCH|1|I|C|1298
6PCH|1|I|G|1299
6PCH|1|I|G|1300
6PCH|1|I|A|1301
6PCH|1|I|A|1302
6PCH|1|I|G|1303
*
6PCH|1|I|C|1625
6PCH|1|I|A|1626
6PCH|1|I|G|1627
*
6PCH|1|I|C|1639
6PCH|1|I|A|1640
6PCH|1|I|A|1641
6PCH|1|I|G|1642

Current chains

Chain I

23S ribosomal RNA

Nearby chains