J3_6PCH_007

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6PCH|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCH_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1604

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PCH|1|I|C|1306
6PCH|1|I|A|1307
6PCH|1|I|A|1308
6PCH|1|I|G|1309
*
6PCH|1|I|C|1605
6PCH|1|I|C|1606
6PCH|1|I|C|1607
6PCH|1|I|A|1608
6PCH|1|I|A|1609
6PCH|1|I|A|1610
6PCH|1|I|C|1611
*
6PCH|1|I|G|1620
6PCH|1|I|U|1621
6PCH|1|I|G|1622

Current chains

Chain I

23S ribosomal RNA

Nearby chains