J3_6PCH_015

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PCH|1|I|A|504, 6PCH|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCH_015 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1263

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6PCH|1|I|G|30
6PCH|1|I|C|31
*
6PCH|1|I|G|474
6PCH|1|I|C|475
6PCH|1|I|G|476
6PCH|1|I|A|477
6PCH|1|I|A|478
6PCH|1|I|A|479
6PCH|1|I|A|480
6PCH|1|I|G|481
6PCH|1|I|A|482
6PCH|1|I|A|483
6PCH|1|I|C|484
*
6PCH|1|I|G|496
6PCH|1|I|A|497
6PCH|1|I|G|498
6PCH|1|I|U|499
6PCH|1|I|G|500
6PCH|1|I|A|501
6PCH|1|I|A|502
6PCH|1|I|A|503
6PCH|1|I|A|504
6PCH|1|I|A|505
6PCH|1|I|G|506
6PCH|1|I|A|507
6PCH|1|I|A|508
6PCH|1|I|C|509
6PCH|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains