J3_6PCQ_005

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1128

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|C|1298
6PCQ|1|I|G|1299
6PCQ|1|I|G|1300
6PCQ|1|I|A|1301
6PCQ|1|I|A|1302
6PCQ|1|I|G|1303
*
6PCQ|1|I|C|1625
6PCQ|1|I|A|1626
6PCQ|1|I|G|1627
*
6PCQ|1|I|C|1639
6PCQ|1|I|A|1640
6PCQ|1|I|A|1641
6PCQ|1|I|G|1642

Current chains

Chain I

23S ribosomal RNA

Nearby chains