J3_6PCQ_017

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0841

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6PCQ|1|I|G|1424
6PCQ|1|I|G|1425
6PCQ|1|I|G|1426
6PCQ|1|I|A|1427
6PCQ|1|I|C|1428
6PCQ|1|I|G|1429
*
6PCQ|1|I|C|1564
6PCQ|1|I|C|1565
*
6PCQ|1|I|G|1568
6PCQ|1|I|A|1569
6PCQ|1|I|A|1570
6PCQ|1|I|A|1571
6PCQ|1|I|A|1572
6PCQ|1|I|G|1573
6PCQ|1|I|C|1574

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2