J3_6PCS_014

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PCS|1|I|A|504, 6PCS|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCS_014 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1211

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6PCS|1|I|G|30
6PCS|1|I|C|31
*
6PCS|1|I|G|474
6PCS|1|I|C|475
6PCS|1|I|G|476
6PCS|1|I|A|477
6PCS|1|I|A|478
6PCS|1|I|A|479
6PCS|1|I|A|480
6PCS|1|I|G|481
6PCS|1|I|A|482
6PCS|1|I|A|483
6PCS|1|I|C|484
*
6PCS|1|I|G|496
6PCS|1|I|A|497
6PCS|1|I|G|498
6PCS|1|I|U|499
6PCS|1|I|G|500
6PCS|1|I|A|501
6PCS|1|I|A|502
6PCS|1|I|A|503
6PCS|1|I|A|504
6PCS|1|I|A|505
6PCS|1|I|G|506
6PCS|1|I|A|507
6PCS|1|I|A|508
6PCS|1|I|C|509
6PCS|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains