J3_6PCT_014

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PCT|1|I|A|504, 6PCT|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCT_014 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.114

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6PCT|1|I|G|30
6PCT|1|I|C|31
*
6PCT|1|I|G|474
6PCT|1|I|C|475
6PCT|1|I|G|476
6PCT|1|I|A|477
6PCT|1|I|A|478
6PCT|1|I|A|479
6PCT|1|I|A|480
6PCT|1|I|G|481
6PCT|1|I|A|482
6PCT|1|I|A|483
6PCT|1|I|C|484
*
6PCT|1|I|G|496
6PCT|1|I|A|497
6PCT|1|I|G|498
6PCT|1|I|U|499
6PCT|1|I|G|500
6PCT|1|I|A|501
6PCT|1|I|A|502
6PCT|1|I|A|503
6PCT|1|I|A|504
6PCT|1|I|A|505
6PCT|1|I|G|506
6PCT|1|I|A|507
6PCT|1|I|A|508
6PCT|1|I|C|509
6PCT|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains