J3_6PPF_011

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GAG*CACAAG

Length

12 nucleotides

Bulged bases

6PPF|1|A|C|2363, 6PPF|1|A|A|2365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_011 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.2605

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|C|2324
6PPF|1|A|U|2325
6PPF|1|A|C|2326
*
6PPF|1|A|G|2350
6PPF|1|A|A|2351
6PPF|1|A|G|2352
*
6PPF|1|A|C|2361
6PPF|1|A|A|2362
6PPF|1|A|C|2363
6PPF|1|A|A|2364
6PPF|1|A|A|2365
6PPF|1|A|G|2366

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

50S ribosomal protein L18

Chain V

50S ribosomal protein L27