J3_6PPF_013

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GUUGAU*AAUCG

Length

13 nucleotides

Bulged bases

6PPF|1|A|U|2858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_013 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.2451

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6PPF|1|A|C|2839
6PPF|1|A|C|2840
*
6PPF|1|A|G|2856
6PPF|1|A|U|2857
6PPF|1|A|U|2858
6PPF|1|A|G|2859
6PPF|1|A|A|2860
6PPF|1|A|U|2861
*
6PPF|1|A|A|2907
6PPF|1|A|A|2908
6PPF|1|A|U|2909
6PPF|1|A|C|2910
6PPF|1|A|G|2911

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain b

50S ribosomal protein L32